USDA ARS VCRU Data Server This web site, https://www.vcru.wisc.edu/sdata, contains data from the laboratory of Philipp W. Simon, USDA-ARS Vegetable Crops Research Unit [Click here for our web page]

Published DNA Sequences from our laboratory

Cloning and expression of carrot (Daucus carota L.) cDNAs coding for enzymes of the carotenoid biosynthetic pathway in roots accumulating different types and amounts of carotenoids. PhD Thesis. University of Wisconsin, Madison, WI

1. AF227950 Daucus carota geranyl geranyl pyrophosphate synthase gene, partial sequence
2. AF227951 Daucus carota isopentenyl pyrophosphate isomerase mRNA, partial cds
3. AF229684 Daucus carota lycopene epsilon cyclase mRNA, partial cds

Conversion of an AFLP fragment linked to the carrot Y₂ locus to a simple, codominant, PCR-based marker form Theor. Appl. Genet. 97, 960-967 (1998)

4. HM124477 Daucus carota genotype B7262 AFLP marker E-ACT X M-CAA 264 flanking sequence
5. HM124478 Daucus carota genotype B9304 AFLP marker E-ACT X M-CAA 264 flanking sequence

Linkage relationships among molecular markers and storage root traits of carrot (Daucus carota L. ssp. sativus) Theor. Appl. Genet. 99, 58-64 (1999)

6. EU664593 Daucus carota subsp. sativus clone DCG321 RFLP marker genomic sequence
7. EU664594 Daucus carota subsp. sativus clone DCG333 RFLP marker genomic sequence
8. EU664595 Daucus carota subsp. sativus clone DCG346 RFLP marker genomic sequence
9. EU664596 Daucus carota subsp. sativus clone DCG352 RFLP marker genomic sequence
10. EU664597 Daucus carota subsp. sativus clone DCG360 RFLP marker genomic sequence
11. EU664598 Daucus carota subsp. sativus clone DCG382 RFLP marker genomic sequence

Euphytica 127, 353-365 (2002)

12. Daucus carota ATP1 (atp1) gene, atp1-Sp allele, complete cds; mitochondrial gene for mitochondrial product
    gi|15429014|gb|AF301602.1|[15429014]
13. Daucus carota atp1 pseudogene, atp1-N2 allele, complete sequence; mitochondrial gene for mitochondrial product
    gi|15429016|gb|AF301603.1|[15429016]
14. Daucus carota ATP1 (atp1) gene, atp1-N1 allele, complete cds; mitochondrial gene for mitochondrial product
    gi|15429017|gb|AF301604.1|[15429017]
15. Daucus carota cytochrome b (cob) gene, cob-N allele, complete cds; and ORF25 (orf25) gene, orf25-N allele, complete cds; mitochondrial genes for mitochondrial products
    gi|15705123|gb|AY007816.1|[15705123]
16. Daucus carota ATPase6 (ATP6) gene, ATP6-Sp1 allele, complete cds; mitochondrial gene for mitochondrial product
    gi|15809212|gb|AY007817.1|AY007817[15809212]
17. Daucus carota NADH dehydrogenase subunit 6 (nad6) gene, nad6-N allele, complete cds; ATPase8 (atp8) gene, atp8-N allele, complete cds; chimeric ATPase9 (atp9) gene, atp9-N2 allele, complete cds; and chimeric ATPase6 (atp6) gene, atp6-N2 allele, partial cds; mitochondrial genes for mitochondrial products
    gi|15809214|gb|AY007818.1|[15809214]
18. Daucus carota ATPase8 (ATP8) gene, ATP8-Sp1a allele, complete cds; truncated ATPase9 (ATP9) gene, ATP9-Sp2 allele, complete cds; and NADH dehydrogenase subunit 6 (NAD6) gene, complete cds; mitochondrial genes for mitochondrial products
    gi|15705126|gb|AY007819.1|[15705126]
19. Daucus carota ATPase8 (ATP8) gene, ATP8-Sp1b allele, complete cds; chimeric ATPase9 (ATP9) gene, ATP9-Sp3 allele, complete cds; and chimeric ATPase6 (ATP6) gene, partial cds; mitochondrial genes for mitochondrial products
    gi|15705130|gb|AY007820.1|[15705130]
20. Daucus carota ATPase8 (ATP8) gene, ATP8-Sp2 allele, complete cds; and cytochrome b (cob) gene, cob-Sp allele, complete cds; mitochondrial genes for mitochondrial products
    gi|15809219|gb|AY007821.1|AY007821[15809219]
21. Daucus carota ATPase9 (ATP9) gene, ATP9-N1 allele, complete cds; mitochondrial gene for mitochondrial product
    gi|15809222|gb|AY007822.1|[15809222]
22. Daucus carota ATPase9 (ATP9) gene, ATP9-Sp1 allele, complete cds; mitochondrial gene for mitochondrial product
    gi|15705134|gb|AY007823.1|[15705134]
23. Daucus carota ATPase6 (ATP6) gene, ATP6-N1 allele, complete cds; mitochondrial gene for mitochondrial product
    gi|15705136|gb|AY007824.1|[15705136]

Plant Mol. Biol. 53 (1-2), 151-162 (2003)

24. AY368232 Daucus carota nonfunctional acid soluble invertase isozyme II gene, partial sequence
25. AY368233 Daucus carota nonfunctional acid soluble invertase isozyme II mRNA, a746 allele, partial sequence
26. AY368234 Daucus carota nonfunctional acid soluble invertase isozyme II mRNA, b498 allele, partial sequence

Mol. Genet. Genomics 275 (5), 450-459 (2006)

27. Daucus carota isolate QAL-A transposon DcMaster, partial sequence
    gi|82542006|gb|DQ250792.1|[82542006]
28. Daucus carota isolate QAL-B transposon DcMaster, partial sequence
    gi|82542007|gb|DQ250793.1|[82542007]
29. Daucus carota isolate QAL-C transposon DcMaster, partial sequence
    gi|82542008|gb|DQ250794.1|[82542008]
30. Daucus carota isolate QAL-E transposon DcMaster, partial sequence
    gi|82542009|gb|DQ250795.1|[82542009]
31. Daucus carota isolate QAL-F transposon DcMaster, partial sequence
    gi|82542010|gb|DQ250796.1|[82542010]
32. Daucus carota isolate QAL-G transposon DcMaster, partial sequence
    gi|82542011|gb|DQ250797.1|[82542011]
33. Daucus carota isolate QAL-H transposon DcMaster, partial sequence
    gi|82542012|gb|DQ250798.1|[82542012]
34. Daucus carota isolate 493-A transposon DcMaster, partial sequence
    gi|82542013|gb|DQ250799.1|[82542013]
35. Daucus carota isolate 493-D transposon DcMaster, partial sequence
    gi|82542014|gb|DQ250800.1|[82542014]
36. Daucus carota isolate F2-A transposon DcMaster, partial sequence
    gi|82542015|gb|DQ250801.1|[82542015]
37. Daucus carota isolate F2-B transposon DcMaster, partial sequence
    gi|82542016|gb|DQ250802.1|[82542016]
38. Daucus carota isolate F2-C transposon DcMaster, partial sequence
    gi|82542017|gb|DQ250803.1|[82542017]
39. Daucus carota isolate F2-E transposon DcMaster, partial sequence
    gi|82542018|gb|DQ250804.1|[82542018]
40. Daucus carota isolate F2-F transposon DcMaster, partial sequence
    gi|82542019|gb|DQ250805.1|[82542019]
41. Daucus carota transposon PIF-like DcMaster-a, complete sequence
    gi|82570158|gb|DQ250806.1|[82570158]
42. Daucus carota transposon PIF-like DcMaster-1, complete sequence
    gi|82570161|gb|DQ250807.1|[82570161]
43. Daucus carota transposon Krak-QAL-1, complete sequence
    gi|85838780|gb|DQ353734.1|[85838780]
44. Daucus carota transposon Krak-QAL-2, complete sequence
    gi|85838781|gb|DQ353735.1|[85838781]
45. Daucus carota transposon Krak-QAL-3, complete sequence
    gi|85838782|gb|DQ353736.1|[85838782]
46. Daucus carota transposon Krak-QAL-4, complete sequence
    gi|85838783|gb|DQ353737.1|[85838783]
47. Daucus carota transposon Krak-QAL-5, complete sequence
    gi|85838784|gb|DQ353738.1|[85838784]
48. Daucus carota transposon Krak-QAL-6, complete sequence
    gi|85838785|gb|DQ353739.1|[85838785]
49. Daucus carota transposon Krak-QAL-7, complete sequence
    gi|85838786|gb|DQ353740.1|[85838786]
50. Daucus carota transposon Krak-QAL-8, complete sequence
    gi|85838787|gb|DQ353741.1|[85838787]
51. Daucus carota transposon Krak-QAL-9, complete sequence
    gi|85838788|gb|DQ353742.1|[85838788]
52. Daucus carota transposon Krak-QAL-10, complete sequence
    gi|85838789|gb|DQ353743.1|[85838789]
53. Daucus carota transposon Krak-493-1, complete sequence
    gi|85838790|gb|DQ353744.1|[85838790]
54. Daucus carota transposon Krak-493-2, complete sequence
    gi|85838791|gb|DQ353745.1|[85838791]
55. Daucus carota transposon Krak-493-3, complete sequence
    gi|85838792|gb|DQ353746.1|[85838792]
56. Daucus carota transposon Krak-493-4, complete sequence
    gi|85838793|gb|DQ353747.1|[85838793]
57. Daucus carota transposon Krak-493-5, complete sequence
    gi|85838794|gb|DQ353748.1|[85838794]
58. Daucus carota transposon Krak-493-6, complete sequence
    gi|85838795|gb|DQ353749.1|[85838795]
59. Daucus carota transposon Krak-493-7, complete sequence
    gi|85838796|gb|DQ353750.1|[85838796]
60. Daucus carota transposon Krak-493-8, complete sequence
    gi|85838797|gb|DQ353751.1|[85838797]
61. Daucus carota transposon Krak-493-9, complete sequence
    gi|85838798|gb|DQ353752.1|[85838798]

Theor. Appl. Genet. 114 (4), 693-704 (2007)

62. Daucus carota subsp. sativus putative isopentenyl pyrophosphate isomerase (IPI) mRNA, complete cds
    gi|79154546|gb|DQ192183.1|[79154546]
63. Daucus carota subsp. sativus putative geranylgeranyl pyrophosphate synthase (GGPS1) mRNA, complete cds
    gi|79154585|gb|DQ192184.1|[79154585]
64. Daucus carota subsp. sativus putative geranylgeranyl pyrophosphate synthase (GGPS2) mRNA, complete cds
    gi|79154638|gb|DQ192185.1|[79154638]
65. Daucus carota subsp. sativus putative phytoene synthase (PSY1) mRNA, complete cds
    gi|79154686|gb|DQ192186.1|[79154686]
66. Daucus carota subsp. sativus putative phytoene synthase (PSY2) mRNA, complete cds
    gi|79154729|gb|DQ192187.1|[79154729]
67. Daucus carota subsp. sativus putative carotenoid isomerase (CRTISO) mRNA, complete cds
    gi|79154795|gb|DQ192188.1|[79154795]
68. Daucus carota subsp. sativus putative zeta carotene desaturase (ZDS2) mRNA, complete cds
    gi|79154851|gb|DQ192189.1|[79154851]
69. Daucus carota subsp. sativus putative lycopene beta cyclase (LCYB) mRNA, complete cds
    gi|79154898|gb|DQ192190.1|[79154898]
70. Daucus carota subsp. sativus putative capsanthin-capsorubin synthase (CCS) mRNA, complete cds
    gi|79154939|gb|DQ192191.1|[79154939]
71. Daucus carota subsp. sativus putative lycopene epsilon cyclase (LCYE) mRNA, complete cds
    gi|79154987|gb|DQ192192.1|[79154987]
72. Daucus carota subsp. sativus putative beta-ring carotene hydroxylase (CHXB1) mRNA, complete cds
    gi|79155022|gb|DQ192193.1|[79155022]
73. Daucus carota subsp. sativus putative beta-ring carotene hydroxylase (CHXB2) mRNA, complete cds
    gi|79155070|gb|DQ192194.1|[79155070]
74. Daucus carota subsp. sativus beta-ring carotene hydroxylase (CHXB3) gene, partial sequence
    gi|79155113|gb|DQ192195.1|[79155113]
75. Daucus carota subsp. sativus putative epsilon-ring carotene hydroxylase (CHXE) mRNA, complete cds
    gi|79155147|gb|DQ192196.1|[79155147]
76. Daucus carota subsp. sativus putative zeaxanthin epoxidase mRNA, complete cds
    gi|79155189|gb|DQ192197.1|[79155189]
77. Daucus carota subsp. sativus putative 9-cis epoxycarotenoid dioxygenase (NCED1) mRNA, complete cds
    gi|79155256|gb|DQ192200.1|[79155256]
78. Daucus carota subsp. sativus putative 9-cis epoxycarotenoid dioxygenase (NCED2) mRNA, complete cds
    gi|79155295|gb|DQ192201.1|[79155295]
79. Daucus carota subsp. sativus putative 9-cis epoxycarotenoid dioxygenase (NCED3) mRNA, complete cds
    gi|79155330|gb|DQ192202.1|[79155330]
80. Daucus carota subsp. sativus putative carotenoid cleavage dioxygenase (CCD1) mRNA, complete cds
    gi|79155373|gb|DQ192203.1|[79155373]
81. Daucus carota subsp. sativus putative carotenoid cleavage dioxygenase (CCD2) gene, partial sequence
    gi|79155441|gb|DQ192204.1|[79155441]
82. Daucus carota subsp. sativus putative carotenoid cleavage dioxygenase (CCD3) gene, partial sequence
    gi|79155478|gb|DQ192205.1|[79155478]
83. Daucus carota subsp. carota putative violaxanthin de-epoxidase (VDE) gene, partial sequence
    gi|79155524|gb|AH015361.1|SEG_DQ192198S[79155524]
84. Daucus carota subsp. carota putative violaxanthin de-epoxidase (VDE) gene, partial sequence
    gi|79155525|gb|DQ192198.1|DQ192198S1[79155525]
85. Daucus carota subsp. carota putative violaxanthin de-epoxidase (VDE) gene, partial sequence
    gi|79155526|gb|DQ192199.1|DQ192198S2[79155526]
86. Daucus carota subsp. sativus phytoene desaturase (PDS) mRNA, complete cds
    gi|79155624|gb|DQ222429.1|[79155624]
87. Daucus carota subsp. sativus zeta carotene desaturase (ZDS1) mRNA, complete cds
    gi|79155661|gb|DQ222430.1|[79155661]

Mol. Genet. Genomics 281 (3), 273-288 (2009)

File in FASTA format containing GenBank accessions FJ147560-FJ147585 (26 sequences)
Note: NCBI has removed these 26 sequences from the searchable portion of GenBank because they are consensus sequences. The records, however, are still present and available for viewing or download.

88. FJ147560 = DCRE1
89. FJ147561 = DCRE2
90. FJ147562 = DCRE3
91. FJ147563 = DCRE4
92. FJ147564 = DCRE5
93. FJ147565 = DCRE6
94. FJ147566 = DCRE7
95. FJ147567 = DCRE8
96. FJ147568 = DCRE9
97. FJ147569 = DCRE10
98. FJ147570 = DCRE11
99. FJ147571 = DCRE12
100. FJ147572 = DCRE13
101. FJ147573 = DCRE14
102. FJ147574 = DCRE15
103. FJ147575 = DCRE16
104. FJ147576 = DCRE17
105. FJ147577 = DCRE18
106. FJ147578 = DCRE19
107. FJ147579 = DCRE20
108. FJ147580 = DCRE21
109. FJ147581 = DCRE22
110. FJ147582 = DCRE23
111. FJ147583 = DCRE24
112. FJ147584 = DCRE25
113. FJ147585 = DCRE26

File in FASTA format containing GenBank accessions FJ147695-FJ150390 (2696 sequences)

114. FJ147695 = BAC C162H02
115. FJ147696 = BAC C162H02
116. FJ147697 = BAC C162D04
117. Remaining 2693 sequences not shown individually

GSSR (Simple Sequence Repeats) source sequences (2010)

Flatfile of this set of sequences

118. FJ816111 = Daucus carota clone GSSR-1 microsatellite sequences.
119. FJ816112 = Daucus carota clone GSSR-2 microsatellite sequence.
120. FJ816113 = Daucus carota clone GSSR-3 microsatellite sequence.
121. FJ816114 = Daucus carota clone GSSR-4 microsatellite sequence.
122. FJ816115 = Daucus carota clone GSSR-5 microsatellite sequences.
123. FJ816116 = Daucus carota clone GSSR-6 microsatellite sequences.
124. FJ816117 = Daucus carota clone GSSR-7 microsatellite sequence.
125. FJ816118 = Daucus carota clone GSSR-8 microsatellite sequence.
126. FJ816119 = Daucus carota clone GSSR-9 microsatellite sequence.
127. FJ816120 = Daucus carota clone GSSR-10 microsatellite sequence.
128. FJ816121 = Daucus carota clone GSSR-11 microsatellite sequences.
129. FJ816122 = Daucus carota clone GSSR-12 microsatellite sequence.
130. FJ816123 = Daucus carota clone GSSR-13 microsatellite sequence.
131. FJ816124 = Daucus carota clone GSSR-14 microsatellite sequence.
132. FJ816125 = Daucus carota clone GSSR-15 microsatellite sequences.
133. FJ816126 = Daucus carota clone GSSR-16 microsatellite sequence.
134. FJ816127 = Daucus carota clone GSSR-17 microsatellite sequence.
135. FJ816128 = Daucus carota clone GSSR-18 microsatellite sequences.
136. FJ816129 = Daucus carota clone GSSR-19 microsatellite sequence.
137. FJ816130 = Daucus carota clone GSSR-20 microsatellite sequences.
138. FJ816131 = Daucus carota clone GSSR-21 microsatellite sequence.
139. FJ816132 = Daucus carota clone GSSR-22 microsatellite sequences.
140. FJ816133 = Daucus carota clone GSSR-23 microsatellite sequences.
141. FJ816134 = Daucus carota clone GSSR-24 microsatellite sequence.
142. FJ816135 = Daucus carota clone GSSR-25 microsatellite sequence.
143. FJ816136 = Daucus carota clone GSSR-26 microsatellite sequence.
144. FJ816137 = Daucus carota clone GSSR-27 microsatellite sequence.
145. FJ816138 = Daucus carota clone GSSR-28 microsatellite sequence.
146. FJ816139 = Daucus carota clone GSSR-29 microsatellite sequence.
147. FJ816140 = Daucus carota clone GSSR-30 microsatellite sequence.
148. FJ816141 = Daucus carota clone GSSR-31 microsatellite sequences.
149. FJ816142 = Daucus carota clone GSSR-32 microsatellite sequence.
150. FJ816143 = Daucus carota clone GSSR-33 microsatellite sequence.
151. FJ816144 = Daucus carota clone GSSR-34 microsatellite sequence.
152. FJ816145 = Daucus carota clone GSSR-35 microsatellite sequence.
153. FJ816146 = Daucus carota clone GSSR-36 microsatellite sequence.
154. FJ816147 = Daucus carota clone GSSR-37 microsatellite sequences.
155. FJ816148 = Daucus carota clone GSSR-38 microsatellite sequence.
156. FJ816149 = Daucus carota clone GSSR-39 microsatellite sequence.
157. FJ816150 = Daucus carota clone GSSR-40 microsatellite sequence.
158. FJ816151 = Daucus carota clone GSSR-42 microsatellite sequence.
159. FJ816152 = Daucus carota clone GSSR-43 microsatellite sequence.
160. FJ816153 = Daucus carota clone GSSR-44 microsatellite sequences.
161. FJ816154 = Daucus carota clone GSSR-45 microsatellite sequence.
162. FJ816155 = Daucus carota clone GSSR-46 microsatellite sequences.
163. FJ816156 = Daucus carota clone GSSR-47 microsatellite sequences.
164. FJ816157 = Daucus carota clone GSSR-48 microsatellite sequence.
165. FJ816158 = Daucus carota clone GSSR-49 microsatellite sequence.
166. FJ816159 = Daucus carota clone GSSR-50 microsatellite sequences.
167. FJ816160 = Daucus carota clone GSSR-51 microsatellite sequence.
168. FJ816161 = Daucus carota clone GSSR-52 microsatellite sequence.
169. FJ816162 = Daucus carota clone GSSR-53 microsatellite sequence.
170. FJ816163 = Daucus carota clone GSSR-54 microsatellite sequences.
171. FJ816164 = Daucus carota clone GSSR-55 microsatellite sequence.
172. FJ816165 = Daucus carota clone GSSR-56 microsatellite sequence.
173. FJ816166 = Daucus carota clone GSSR-57 microsatellite sequence.
174. FJ816167 = Daucus carota clone GSSR-58 microsatellite sequences.
175. FJ816168 = Daucus carota clone GSSR-59 microsatellite sequence.
176. FJ816169 = Daucus carota clone GSSR-60 microsatellite sequence.
177. FJ816170 = Daucus carota clone GSSR-61 microsatellite sequence.
178. FJ816171 = Daucus carota clone GSSR-62 microsatellite sequence.
179. FJ816172 = Daucus carota clone GSSR-63 microsatellite sequences.
180. FJ816173 = Daucus carota clone GSSR-64 microsatellite sequences.
181. FJ816174 = Daucus carota clone GSSR-65 microsatellite sequence.
182. FJ816175 = Daucus carota clone GSSR-66 microsatellite sequence.
183. FJ816176 = Daucus carota clone GSSR-67 microsatellite sequences.
184. FJ816177 = Daucus carota clone GSSR-68 microsatellite sequence.
185. FJ816178 = Daucus carota clone GSSR-69 microsatellite sequence.
186. FJ816179 = Daucus carota clone GSSR-70 microsatellite sequence.
187. FJ816180 = Daucus carota clone GSSR-71 microsatellite sequence.
188. FJ816181 = Daucus carota clone GSSR-72 microsatellite sequences.
189. FJ816182 = Daucus carota clone GSSR-73 microsatellite sequences.
190. FJ816183 = Daucus carota clone GSSR-74 microsatellite sequences.
191. FJ816184 = Daucus carota clone GSSR-75 microsatellite sequence.
192. FJ816185 = Daucus carota clone GSSR-76 microsatellite sequence.
193. FJ816186 = Daucus carota clone GSSR-77 microsatellite sequences.
194. FJ816187 = Daucus carota clone GSSR-78 microsatellite sequence.
195. FJ816188 = Daucus carota clone GSSR-79 microsatellite sequences.
196. FJ816189 = Daucus carota clone GSSR-80 microsatellite sequence.
197. FJ816190 = Daucus carota clone GSSR-81 microsatellite sequences.
198. FJ816191 = Daucus carota clone GSSR-82 microsatellite sequence.
199. FJ816192 = Daucus carota clone GSSR-83 microsatellite sequence.
200. FJ816193 = Daucus carota clone GSSR-84 microsatellite sequence.
201. FJ816194 = Daucus carota clone GSSR-85 microsatellite sequence.
202. FJ816195 = Daucus carota clone GSSR-86 microsatellite sequences.
203. FJ816196 = Daucus carota clone GSSR-87 microsatellite sequences.
204. FJ816197 = Daucus carota clone GSSR-88 microsatellite sequence.
205. FJ816198 = Daucus carota clone GSSR-89 microsatellite sequences.
206. FJ816199 = Daucus carota clone GSSR-90 microsatellite sequences.
207. FJ816200 = Daucus carota clone GSSR-91 microsatellite sequence.
208. FJ816201 = Daucus carota clone GSSR-92 microsatellite sequence.
209. FJ816202 = Daucus carota clone GSSR-93 microsatellite sequences.
210. FJ816203 = Daucus carota clone GSSR-94 microsatellite sequence.
211. FJ816204 = Daucus carota clone GSSR-95 microsatellite sequences.
212. FJ816205 = Daucus carota clone GSSR-96 microsatellite sequence.
213. FJ816206 = Daucus carota clone GSSR-97 microsatellite sequences.
214. FJ816207 = Daucus carota clone GSSR-98 microsatellite sequence.
215. FJ816208 = Daucus carota clone GSSR-99 microsatellite sequence.
216. FJ816209 = Daucus carota clone GSSR-100 microsatellite sequence.
217. FJ816210 = Daucus carota clone GSSR-101 microsatellite sequences.
218. FJ816211 = Daucus carota clone GSSR-102 microsatellite sequence.
219. FJ816212 = Daucus carota clone GSSR-103 microsatellite sequence.
220. FJ816213 = Daucus carota clone GSSR-104 microsatellite sequence.
221. FJ816214 = Daucus carota clone GSSR-105 microsatellite sequence.
222. FJ816215 = Daucus carota clone GSSR-106 microsatellite sequences.
223. FJ816216 = Daucus carota clone GSSR-107 microsatellite sequences.
224. FJ816217 = Daucus carota clone GSSR-108 microsatellite sequences.
225. FJ816218 = Daucus carota clone GSSR-109 microsatellite sequence.
226. FJ816219 = Daucus carota clone GSSR-110 microsatellite sequence.
227. FJ816220 = Daucus carota clone GSSR-111 microsatellite sequence.
228. FJ816221 = Daucus carota clone GSSR-112 microsatellite sequence.
229. FJ816222 = Daucus carota clone GSSR-113 microsatellite sequences.
230. FJ816223 = Daucus carota clone GSSR-114 microsatellite sequences.
231. FJ816224 = Daucus carota clone GSSR-115 microsatellite sequence.
232. FJ816225 = Daucus carota clone GSSR-116 microsatellite sequence.
233. FJ816226 = Daucus carota clone GSSR-117 microsatellite sequence.
234. FJ816227 = Daucus carota clone GSSR-118 microsatellite sequence.
235. FJ816228 = Daucus carota clone GSSR-119 microsatellite sequences.
236. FJ816229 = Daucus carota clone GSSR-120 microsatellite sequence.
237. FJ816230 = Daucus carota clone GSSR-121 microsatellite sequence.
238. FJ816231 = Daucus carota clone GSSR-122 microsatellite sequence.
239. FJ816232 = Daucus carota clone GSSR-123 microsatellite sequence.
240. FJ816233 = Daucus carota clone GSSR-124 microsatellite sequences.
241. FJ816234 = Daucus carota clone GSSR-125 microsatellite sequence.
242. FJ816235 = Daucus carota clone GSSR-126 microsatellite sequences.
243. FJ816236 = Daucus carota clone GSSR-127 microsatellite sequences.
244. FJ816237 = Daucus carota clone GSSR-128 microsatellite sequence.
245. FJ816238 = Daucus carota clone GSSR-129 microsatellite sequence.
246. FJ816239 = Daucus carota clone GSSR-130 microsatellite sequence.
247. FJ816240 = Daucus carota clone GSSR-131 microsatellite sequence.
248. FJ816241 = Daucus carota clone GSSR-132 microsatellite sequence.
249. FJ816242 = Daucus carota clone GSSR-133 microsatellite sequence.
250. FJ816243 = Daucus carota clone GSSR-135 microsatellite sequences.
251. FJ816244 = Daucus carota clone GSSR-136 microsatellite sequence.
252. FJ816245 = Daucus carota clone GSSR-137 microsatellite sequence.
253. FJ816246 = Daucus carota clone GSSR-138 microsatellite sequences.
254. FJ816247 = Daucus carota clone GSSR-139 microsatellite sequence.
255. FJ816248 = Daucus carota clone GSSR-140 microsatellite sequence.
256. FJ816249 = Daucus carota clone GSSR-141 microsatellite sequence.
257. FJ816250 = Daucus carota clone GSSR-142 microsatellite sequence.
258. FJ816251 = Daucus carota clone GSSR-143 microsatellite sequence.
259. FJ816252 = Daucus carota clone GSSR-144 microsatellite sequences.
260. FJ816253 = Daucus carota clone GSSR-145 microsatellite sequence.
261. FJ816254 = Daucus carota clone GSSR-146 microsatellite sequences.
262. FJ816255 = Daucus carota clone GSSR-147 microsatellite sequences.
263. FJ816256 = Daucus carota clone GSSR-148 microsatellite sequence.
264. FJ816257 = Daucus carota clone GSSR-149 microsatellite sequences.
265. FJ816258 = Daucus carota clone GSSR-150 microsatellite sequence.
266. FJ816259 = Daucus carota clone GSSR-151 microsatellite sequences.
267. FJ816260 = Daucus carota clone GSSR-152 microsatellite sequences.
268. FJ816261 = Daucus carota clone GSSR-153 microsatellite sequences.
269. FJ816262 = Daucus carota clone GSSR-154 microsatellite sequence.
270. FJ816263 = Daucus carota clone GSSR-155 microsatellite sequence.
271. FJ816264 = Daucus carota clone GSSR-156 microsatellite sequence.
272. FJ816265 = Daucus carota clone GSSR-157 microsatellite sequences.
273. FJ816266 = Daucus carota clone GSSR-158 microsatellite sequences.
274. FJ816267 = Daucus carota clone BSSR-12 microsatellite sequence.
275. FJ816268 = Daucus carota clone BSSR-14 microsatellite sequence.

Centromere repeat motif (2011)

Carrot EST Consensus sequences

These sequences could not be deposited in GenBank, as they are consensus sequences of several genotypes. These sequences were made available as a supplemental file for the publication De novo assembly and characterization of the carrot transcriptome reveals novel genes, new markers, and genetic diversity, published online August 2, 2011.

The file Additional_File_2.zip is a compressed archive which contains consensus sequences in FASTA format.
This compressed file is about 15.4 MBytes in size, and will uncompress to a 49.6 MByte FASTA file.
This FASTA file is the exact same file as the supplementary file 1471-2164-12-389-s2.doc, which was renamed by the journal.

Raw illumina reads from this project are available in the NCBI SRA archive under accession number SRA035376

Sanger sequences from this project are available in GenBank under the accession numbers JG753039 – JG771082

Carrot Mitochondrial Genome complete sequence

Reference publication: http://www.biomedcentral.com/1471-2229/12/61 De novo assembly of the carrot mitochondrial genome using next generation sequencing of whole genomic DNA provides first evidence of DNA transfer into an angiosperm plastid genome

Expression and mapping of anthocyanin biosynthesis genes in carrot. TAG (2013)

KASPar assay marker sequences

Sequences used to design KBiosciences KASPar assay primers. This file was published as supplementary file S3 in the publication:
"Genetic structure and domestication of carrot (Daucus carota subsp. sativus) (Apiaceae)" American Journal of Botany 100: 930-938. 2013.
Link to publication
ajb130005.DC1.Iorizzo_AppS3.txt
Sequences of the KASPar primers are in the following file, which was included with the publication
ajb20930-sup-0005.xlsx

This page last modified Friday, 09-Aug-2019 15:12:10 CDT